PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G257400.1
Common NameB456_007G257400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 81aa    MW: 9178.63 Da    PI: 9.0202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G257400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.0001120561354
                        HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        R+ i +++  L+e +P+ +      K + a++L + v+Y+k L
  Gorai.007G257400.1 20 RETIAERIRALQERVPSvN------KTDRAAMLDEIVDYVKFL 56
                        78899************55......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.353756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-92064IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-102061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.55E-62061No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MVATVTNHAE LNPSIFSLGR ETIAERIRAL QERVPSVNKT DRAAMLDEIV DYVKFLRLQV  60
KVSSTLLPVF SHISFSYFYF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013739372.14e-20PREDICTED: transcription factor UNE12-like
SwissprotQ9ZUG93e-17BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0D2SR897e-53A0A0D2SR89_G
STRINGGLYMA20G36770.14e-18(Glycine max)
STRINGORGLA03G0340500.13e-18(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3701622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-18LJRHL1-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]